miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|125349009|gb|EL363521.1|EL363521 CGGGGGATTCACTCTTTTCATTCCCACTAAACACAAACATAAATCCTTCATATTTATATAGAATCAGAGCTTCAATTCAA
GATCATAAAGCAAGAATCCTTTTTTCAAAATTAGATCAAGAAATGGGGAGGCCTCCATGTTGTGATAAACTTGGTGTCAA
GAAAGGTCCATGGACTCCTGAACAAGATATTATGCTTGCTTCATACATTCAGCAACATGGCCCCGGGAATTGGCGTCAAG
TCCCAACCAACACCGGACTAAGAAGATGCAGTAAGAGTTGTAGGCTGCGATGGACGAATTATCTCAGGCCTGGAATCAGA
AGGGGAGATTTCACAGATGATGAGGAGAAAATGACCATTCAGCTTCAGGCTCTTCTGGGCAACAAATGGGCGGCTATAGC
TTCTTATCTTCCTGAAAGAACTGATAACGATATCAAGAATTACTGGAATACCCATTTGAAAAAGAAGCTCAAGAAGCTTG
AAATGGAGTCGGAGGATCATGATATGATTCATAATAAAAATAAAGATAGGTTTTCGTCTTCAACGTCATCATCATCATCT
TCACACTGTAACTCTAGAGGCCAATGGGAGAAGAGGCTTCAAACCGATATTCAGATGGCAAAACAAGCCTTAACCGATGC
TTTGTCAATTGATCACAAACCGGTTTTTCTACCTCAAACAACTAAATCATCCTCTCATACGCCTGCATACCCTTCTAGCA
CTGATAACATAGCCAAATTACTCACAGGCTTCATGAAAAACTCCCCCAATAACGCCCAAACATGTTCAAATTCAAGTACT
CGTGAATC




Most similar to sp|P81392|MYB06_ANTMA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P81392|MYB06_ANTMA Myb-related protein 306 OS=Antirrhinum majus
           GN=MYB306 PE=2 SV=1
          Length = 316

 Score =  270 bits (691), Expect = 7e-72
 Identities = 136/235 (57%), Positives = 163/235 (69%), Gaps = 7/235 (2%)
 Frame = +3

Query: 123 MGRPPCCDKLGVKKGPWTPEQDIMLASYIQQHGPGNWRQVPTNTGLRRCSKSCRLRWTNY 302
           MGRPPCCDK+GVKKGPWTPE+DI+L SYIQ+HGPGNWR +P+NTGL RCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAIPSNTGLLRCSKSCRLRWTNY 60

Query: 303 LRPGIRRGDFTDDEEKMTIQLQALLGNKWAAIASYLPERTDNDIKNYWNTHXXXXXXXXE 482
           LRPGI+RGDFT+ EEKM I LQALLGN+WAAIASYLP RTDNDIKNYWNTH        +
Sbjct: 61  LRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTH--LKKKLEK 118

Query: 483 MESEDHDMIHNKNKDRFXXXXXXXXXXHCNSRGQWEKRLQTDIQMAKQALTDALSI---- 650
           ++S ++    + N                 S+GQWE+RLQTDI MAKQAL DALS+    
Sbjct: 119 LQSPENGKCQDGNSS--------VDSDKSVSKGQWERRLQTDIHMAKQALCDALSLDKTS 170

Query: 651 ---DHKPVFLPQTTKSSSHTPAYPSSTDNIAKLLTGFMKNSPNNAQTCSNSSTRE 806
              D   +   QTT+      +  SS +NIA+LL  + K SP NA + S + + E
Sbjct: 171 SSTDDPKLSTVQTTQPRPFQASTYSSAENIARLLENWKKKSPVNASSTSQAGSSE 225